Introducing socomap
socomap is an online platform for analyzing whole-brain light microscopy stacks of mice. We provide highly accurate soma segmentation and cell counts for all cells expressing a specific marker in your dataset. We also offer brain region specific cell counts by mapping the dataset to the Allen Brain Atlas.
socomap is our fully automated deep-learning pipeline for whole-brain screening
We first segment and analyze all individual cells, quantify them, and then register each cell to the 71 regions defined in the Allen Brain Atlas.
You simply submit your dataset into our pipeline, and get notified by results via e-mail. All results are also accessible from your account in our socomap dashboard.
All uploads are encrypted, and get securely stored and backed up on storage servers located in the EU.
We commit ourselves to delivering high-quality results by combining latest machine-learning research with in-house proofreading by our QA team, all holding Master degrees in Biology.
Visualization of soma segmentation, color-coded per region (scale bar represents 1.4 mm).
We currently offer 2 segmentation options on light microscopy datasets. If these options don’t fit your dataset or if you are looking for different services, please get in touch with us.
1,000
to Allen Brain Atlas
500
Prices are displayed excluding VAT. VAT applies if your billing address is in Switzerland.
