Introducing TomoTrace
TomoTrace is a platform for automated segmentation of stained and unstained TEM tomograms. The pipeline delivers high quality segmentation for a large range of different organelles and other cellular structures, from microtubules to ER, Golgi apparatus and plasma membranes.
Our standard TomoTrace package includes segmentation of more than 10 different cellular structures and organelles, including plasma membrane, endoplasmic reticulum, mitochondria, Golgi apparatus, and microtubules.
Your cellular structure or organelle of interest is not part of the standard package? No problem, just let us know what your specific structures of interest are. We offer custom segmentation, analysis and visualization packages, tailored to your needs.
All uploads are encrypted, and get securely stored and backed up on storage servers located in the EU.
Our scientists and machine-learning experts are committed to produce high-quality segmentations, setting new standards in the field.
The standard package includes the segmentation of more than 10 cellular structures and organelles. If you have an additional, custom request, please get in touch with us.
| < 50 Datasets | ≥ 50 Datasets | ≥ 100 Datasets | ||||
|---|---|---|---|---|---|---|
| Included Segmentation Classes |
Endoplasmic Reticulum, Golgi Apparatus, Mitochondria, Plasma Membrane, Ribosomes, Vesicles, Microtubules, Peroxisomes, Lipid Droplets, Nuclear Membrane |
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| Price | 100 per Dataset |
90 per Dataset |
80 per Dataset |
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Prices are displayed excluding VAT. VAT applies if your billing address is in Switzerland.
Segmentations performed in collaboration with the Fitzpatrick lab, Columbia University, New York City, on unpublished cryo-electron tomograms of neurons.
FAQ
What file types can I upload?
We support all common image formats for TEM tomography stacks such as MRC, REC, H5, TIFF or ZIP files. If you want to have multiple datasets processed, please compress your datasets into a single ZIP archive.
Should I upload tilt series or computed tomography stacks?
We prefer computed tomography stacks. But please contact us at contact@ariadne.ai if you would like to upload tilt series.
Is it possible to have structures/organelles segmented other than those listed?
Yes, just upload your datasets and indicate which custom segmentation classes you need and we will contact you within 1-2 business days with a corresponding offer. The segmentation results are provided as TIFF stacks, where each segmentation class has a unique ID. If you require any other file format, please get in touch with us at contact@ariadne.ai.
How are the results delivered?
The segmentation results are provided as TIFF stacks, where each segmentation class has a unique ID. If you require any other file format, please get in touch with us at contact@ariadne.ai.
How long does the segmentation take?
Usually, your order will be segmented within 1–2 weeks after arrival of the payment. The duration will depend on the image signal-to-noise, the image resolution, the difficulty of the segmentation task and the number of datasets. You will be notified by e-mail once your results are ready for download.
Is my data safe with you?
We take data security very seriously. All data provided by our customers is kept strictly confidential and maintained on secure infrastructure.
What payment options do you accept?
You can pay with credit card (via stripe) or by wire transfer. For the latter, you will receive an invoice with your order details after you submit your dataset.
