3dEMtrace is our new platform for segmenting cell structures in volume electron microscopy datasets. Simply upload your image stack, specify the structures you would like to segment, and we take it from there.
3dEMtrace is the electron microscopy data segmentation solution that doesn’t eat up hundreds of hours of your time.
We can segment cells,cell structure, and organelles such as mitochondria, golgi apparatus, lysosomes, nuclear membranes, endoplasmic reticulum, lipid droplets, endosomes, all according to your specification.
In addition to volume segmentation of mitochondria, we now also offer detailed reconstruction of cristae.
All uploads are encrypted, and get securely stored and backed up on storage servers located in the EU.
We commit ourselves to delivering high-quality results by combining latest machine-learning research with in-house proofreading by our QA team, all holding Master degrees in Biology.
The price per dataset is based on which kind of organelles you want to reconstruct. You can combine different segmentation categories per dataset.
For special requests or other cell types, please get in touch with us over e-mail.
| Base price | Category price | Add-ons | |
|---|---|---|---|
|
Nuclei |
1,000 | 1,000 | |
|
Mitochondria |
1,500 | New Cristae Segmentation 1,000 |
|
|
Endoplasmic reticulum |
2,000 | ||
|
Synaptic junctions |
2,000 |
Prices are displayed excluding VAT. VAT applies if your billing address is in Switzerland.
FAQ
What file types can I upload?
We currently accept TIFF and ZIP files. Please make sure to compress your dataset into a ZIP archive if it consists of multiple image files.
What is the maximum dataset size?
We currently accept datasets of up to 100 Gigavoxels and a maximum file size of 100 GiB. If your dataset exceeds this size, please get in touch with us, and we will prepare a custom quote for you.
I would like to segment cellular structures that are not on the list or my dataset is larger than 100 GiB, what should I do?
We will do our best to satisfy all your segmentation needs. Just contact us at contact@ariadne.ai if you would like to segment cellular structures that are not on the list or if your dataset exceeds 100 GiB.
What payment options do you accept?
You can pay with credit card (via stripe) or by wire transfer. For the latter, you will receive an invoice with your order details after you submit your dataset.
How are the results delivered?
The segmentation results are provided as TIFF stacks. If you require any other file format, please get in touch with us at contact@ariadne.ai.
How long does the segmentation take?
Usually, your order will be segmented within 1–2 months. The duration will depend on the dataset quality and the difficulty of the segmentation task. You will be notified by e-mail once your results are ready for download.
Is my data safe with you?
We take data security very seriously. All data provided by our customers is kept strictly confidential and maintained on secure infrastructure.
